Statistical Methodology
- Bar, Booth, Liu and Wells (2018), "Facilitating high-dimensional transparent classification via empirical Bayes variable selection", Applied Stochastic Models in Business and Industry. Published as Early View.
- Booth, Welsh (2018) "Generalized Regression Estimation via the Bootstrap". Under review.
- Quan, Booth, Wells (2018) "Rank-based approach for estimating correlations in mixed ordinal data". Under review.
- Wan, Booth, Wells (2018) "Variational Bayes for hierarchical mixture models", Handbook of Big Data Analytics, 151-201. Springer
- Gaynanova, Booth, Wells (2016) "Penalized versus constrained generalized eigenvalue problems", Journal of Computational and Graphical Statistics. Posted online 06 Apr 2016.
- Gaynanova, Booth, Wells (2016) "Simultaneous sparse estimation of canonical vectors in the p>>N setting", Journal of the American Statistical Association, 111(514):696-706.
- Bar, Booth, Wells (2014) "A bivariate model for simultaneous testing in bioinformatics data", Journal of the American Statistical Association, 109(506):537-547.
- Kormaksson, Booth, Figueroa and Melnick (2012) "Integrative model-based clustering of microarray methylation and expression data", Annals of Applied Statistics, 6(3):1327-1347.
- Bar, Booth and Wells (2012), "A mixture model approach for parallel testing for unequal variances". Statistical Applications in Genetics and Molecular Biology, 11(1) Article 8.
- Cunningham and Booth (2011), "A Bayesian approach to analysis of covariance in balanced randomized block experiments". Journal of Statistical Computation and Simulation, 81(11):1449-1460.
- Bar, Booth, Schifano and Wells (2010), "Laplace approximated EM Microarray Analysis: an empirical Bayes approach for comparative microarray experiments". Statistical Science 25(3):388-407..
- Booth, Federer, Wells and Wolfinger (2009), "A multivariate variance component model for analysis of covariance in designed experiments", Statistical Science 24(2):223-237.
- Zipunnikov, Booth and Yoshida (2009), "Counting tables using the double saddlepoint approximation". Journal of Computational and Graphical Statistics 18(4):915-929.
- Butler, Sutton, Booth and Ohman-Strickland (2008), "Simulation-assisted saddlepoint approximation", Journal of Statistical Computation and Simulation, 79(8):731-745.
- Booth, Casella and Hobert (2008), "Clustering using objective functions and stochastic search", Journal of the Royal Statistical Society B 70(1):119-140.
- Hitchcock, Booth and Casella (2007), "The effect of pre-smoothing functional data on cluster analysis", Journal of Statistical Computation and Simulation, 77(12):1043-1055.
- Hitchcock, Casella and Booth (2006), "Improved estimation of dissimilarities by smoothing functional data", Journal of the American Statistical Association, 101(473):211-222.
- Booth, Capanu and Heigenhauser (2005), "Exact conditional p-value calculation for the quasi-symmetry model", Journal of Computational and Graphical Statistics, 15(3):716-725.
Applications
- Sarah E. Lyons, Zhehan Tang, James Booth, Quirine M. Ketterings (2018), "Nitrogen Response Models for Winter Cereals Grown for Forage", Journal of Agronomy and Crop Science.
- Zawack, K., Love, W., Lanzas, C., Booth, J.G., Grohn, Y.T. (2018), "Inferring the interaction structure of resistance to antimicrobials". Preventive Veterinary Medicine 152:81-88.
- Salerno, S., Mehrmohamadi, M., Liberti, M.V., Wan, M., Wells, M.T., Booth, J.G. and Locasale, J.W., (2017), "RRmix: A method for simultaneous batch effect correction analysis of metabolomics data in the absence of internal standards", PLoS ONE.
- Zawack, K., Li, M., Booth, J.G., Love, W., Lanzas, C., Grohn, Y. (2016), "Monitoring antimicrobial resistance in the food supply chain and its implications for FDA policy initiatives", Antimicrobial Agents and Chemotherapy, 602:5302-5311.
- Love, W., Zawack, K., Booth, J.G., Grohn, Y.T and Lanzas, C. (2016), "Markov networks of collateral resistance: National antimicrobial resistance monitoring system surveillance results from Escherichia coli Isolates, 2004-2012", PLoS Computational Biology, 12: e1005160.
- Eilertson, Booth, Bustamante (2012) "SnIPRE: Selection inference using a Poisson random effects model" PLoS Computational Biology 8(12): e1002806. doi:10.1371/journal.pcbi.1002806.
- Hirschl, Booth, Glenna and Green (2012), "Politics, religion, and society: Is the United States experiencing a period of religious-political polarization?", Review of European Studies 4(4) (Aug 3, 2012 Epub ahead of print). Data for the RES paper can be found here.
- Rosenbaum, Bar, Beg, Segrč, Booth, Cotta and Angenent (2012), "Transcriptional analysis of Shewanella oneidensis MR-1 with an electrode compared to Fe(III)citrate or oxygen as terminal electron acceptor", PLoS ONE 7(2):e30827.
- Booth, Eilertson, Olinares and Yu (2011), "A Bayesian mixture model for comparative spectral count data in shotgun proteomics". Molecular and Cellular Proteomics 10(8):M110.007203. Data analyzed in this paper can be found here.
- Rosenbaum, Bar, Beg, Segrè, Booth, Cotta and Angenent (2011), "Shewanella oneidensis in a lactate-fed pure-culture and a glucose-fed co-culture with Lactococcuslactis with an electrode as electron acceptor". Bioresource Technology 102(3):2623-2628 (Oct 12, 2010 Epub ahead of print).
- Figueroa, Lugfhart, Li, Erpelnick-Verschueren, Deng, Christos, Schifano, Booth, van Putten, Skrabenek, Campagne, Mazumdar, Greally, Valk, Lowenberg, Delwel and Melnick (2010), ``DNA methylation signatures identify biologically distinct subtypes in acute myeloid leukemia'', Cancer Cell 07 January.
- Hirschl, Booth and Glenna (2009), "The link between voter choice and religious identity in contemporary society: bringing classical theory back in", Social Science Quarterly 90(4):927-944. Data for the SSQ paper can be found here
- Holloway, Booth, Edelmann, McGowan, Cohen (2008), "MUS81 generates a subset of MLH1-MLH3-independent crossovers in mammalian meiosis", PLoS Genetics 4(9): e1000186. doi:10.1371/journal.pgen.1000186.
- Davis, Lewenstein, Simon, Booth, Connolly (2008), "Open access publishing, article downloads, and citations: randomised controlled trial", BMJ 2008;337:a568.
- Joo, Booth, Namkoong, and Casella (2008), "Model-based Bayesian clustering (MBBC)", Bioinformatics, 15 March 2008; 24: 874-875.
- Brooks, MacNguyen, Hall, Gupta and Booth (2008), "Indirect Carrier Detection of CanineHemophilia A Using Factor VIII Microsatellite Markers", Animal Genetics, 39:306-309.
- Kim, Booth, Gauch, Sun, Park, Lee and Lee (2008), "Simple Sequence Repeats in Neurospora crassa: distribution, polymorphism and evolutionary inference", BMC Genomics 9:31.
- Michael, Park, Kim, Booth, Byer, Sun, Chory, Lee (2007), "Simple sequence repeats provide a substrate for phenotypic variation in the Neurospora crassa circadian clock", PLoS ONE 2(8): e795.
- Joo, Casella, Booth, Lee and Enkemann (2007), "Normalization of Dye Bias in Microarray Data Using the Mixture of Splines Model", Statistical Applications in Genetics and Molecular Biology, Vol. 6, Iss. 1, Art. 2.